Book Chapters

Malaia E, Gonzalez-Castillo J, Webber-Fox C, Talavage TM, Wilbur B. “Neuronal processing of verbal event structure: temporal and functional dissociation between telic and atelic verbs” In: de Almeida RG, Manouilidou C, eds. Cognitive science perspectives on verb representation and processing. Cham: Springer International Publishing; 2015:131–140.

Talavage TM, Johnsrude IS, Gonzalez-Castillo J “Hemodynamic Imaging: Functional Magnetic Resonance Imaging” In: Poeppel D, Overath T, Popper AN, Fay RR, eds. The Human Auditory Cortex.Vol 43. Springer Handbook of Auditory Research. New York, NY: Springer New York; 2012:129–162.

Peer-reviewed Publications

2023

Revsine C, Gonzalez-Castillo J, Merriam E, Bandettini PA, Ramirez FM. “A unifying model for disordant and concordant results in human nueroimaging studies of facial viewpoint selectivity” Pre-print in BioRxiv.

Gonzalez-Castillo J, Fernandez IS, Lam KC, Handwerker DA, Pereira F, Bandettini PA. “Manifold Learning for Time-varying Functional Connectivity” Pre-print in BioRxiv.

2022

Gonzalez-Castillo J “Traveling and standing waves in the brain” Nature Neuroscience (2022)

Gonzalez-Castillo J, Fernandez IS, Handwerker DA, Bandettini PA. “Ultra-slow fluctuations in the fourth ventricle as a marker of drowsiness” NeuroImage (2022) 259: 119424

Bandettini PA, Gonzalez-Castillo J, Handwerker DA, Taylor P, Chen G, Thomas A. “The challenge of BWAs: Unknown unkowns in feature space and variance” Med (2022) 3(8): 526-531

Taylor P, Reynols RC, Calhoun V, Gonzalez-Castillo J et al. “Highlight results, don’t hide them: enhance interpretation, reduce bias and improve reproducibility” bioRxiv (2022)

Uruñuela E, Gonzalez-Castillo J, Zhang C, Bandettini PA, Caballero-Gaudes C. “Improved whole-brain multivariate hemodynamic deconvolution for multi-echo fMRI with stability selection” bioRxiv (2022)

2021

DuPre E, Salo T, Ahmed Z, Bandettini PA, et al. “TE-dependent analysis of multi-echo fMRI with tedana” Journal of Open Source Software (2021) 6(66): 3669.

Gau R, Noble S, Heuer K, et al. “Brainhack: Developing a culture of open, inclusive, community-driven neuroscience” Neuron (2021) In Press.

Gonzalez-Castillo J, Kam JWY, Hoy CW, Bandettini PA. “How to interpret resting-state fMRI: ask your participants” Journal of Neuroscience (2021) 41(6):1130-1141 talk

2020

Gonzalez-Castillo J, Ramot M, Momenan R. “Towards expanded utility of Realtime fMRI Neurofeedback in clinical applications” Frontiers in Human Neuroscience (2020) 14:471 paper

Rolinski R, You X, Gonzalez-Castillo J, Norato G, Reynolds RC, Inati SK, Theodore WH. “Language lateralization from task-based and resting-state functional MRI in patients with epilepsy” Human Brain Mapping (2020) 41(11):3133-3146 paper

Handwerker DA, Ianni G, Gutierrez B, Roopchansingh V, Gonzalez-Castillo J, Chen G, Bandettini PA, Ungerleider LG, Pitcher D. “Theta-burst TMS to the posterior superior temporal sulcus decreases resting-state fMRI connectivity across the face processing network” Netowork Neuroscience (2020) 4(3):746-760 paper

2019

Gonzalez-Castillo J, Caballero-Gaudes C, Topolski N, Handwerker DA, Pereira F, Bandettini PA. “Imaging the spontaneous flow of thought: distinct periods of cognition contribute to dynamic functional connectivity during rest”. NeuroImage (2019) 202:116129 paper talk data

Chai Y, Handwerker DA, Marrett S, Gonzalez-Castillo J, Merriam EP, Hall A, Molfese PJ, Bandettini PA. “Visual temporal frequency shows a distinct cortical architecture using fMRI” NeuroImage (2019) 197:13-23 paper

Caballero-Gaudes C, Moia S, Panwar PA, Bandettini PA, Gonzalez-Castillo J. “A deconvolution algorithm for multi-echo functional MRI: multi-echo sparse paradigm free mapping” NeuroImage (2019) 202:116081 paper talk

Xie H, Zheng CY, Handwerker DA, Bandettini PA, Calhoun VD, Mitra S, Gonzalez-Castillo J. “Efficacy of different dynamic functional connectivity methods to capture cognitively relevant information”. NeuroImage (2019) 188:502-514 paper data

Ramot M, Gonzalez-Castillo J. “A framework for offline evaluation and optimization of real-time algorithms for use in neurofeedback, demonstrated on an instantaneous proxy for correlations” NeuroImage (2019) 188:322-334 paper

2018

Xie H, Gonzalez-Castillo J, Damaraju E, Bandettni PA, Calhoun V, Mitra S. “Time-varying whole-brain functional network connectivity coupled to task engagement” Network Neuroscience (2018) 3(1):49-66 paper data

Gonzalez-Castillo J, Bandettini PA. “Task-based dynamic connectivity: recent findings and open questions” NeuroImage, 2018; 180, 526-533 paper data

Xie H, Calhoun V, Gonzalez-Castillo J, Damaraju E, Miller R, Bandettini PA, Mitra S. “Whole-brain connectivity dynamics reflect both task-specific and individual-specific modulation: a multitask study”. NeuroImage (2018) 180(Part B):495-504 paper

Saggar M, Sporns O, Gonzalez-Castillo J, Bandettini PA, Carlsson G, Glover G, Reiss AL. “Towards a new approach to reveal dynamical organization of the brain using topological data analysis”. Nature Communications (2018) 9(1):1399 paper

Jangraw DC, Gonzalez-Castillo J, Handwerker DA, Ghane M, Rosenberg M, Panwar P, Bandettini PA. “A Functional Connectivity-based neuromarker of Sustained Attention Generalizes to Predict Recall in Naturalistic Reading Task” NeuroImage (2018) 166:99-109 paper

Torrisi S, Gorka AX, Gonzalez-Castillo J, O’Connell K, Balderston N, Grillon C, Ernst M. “Extended amygdala connectivity changes during sustained shock anticipation” Translational Psychiatry (2018) 8(1):33 paper

2017

Huber L, Handwerker D, Jangraw D, Hall H, Stuber C, Gonzalez-Castillo J, Ivanov D, Marrett S, Guidi M, Goense J, Poser BA, Bandettini PA. “High-Resolution CBV-fMRI allows mapping of laminar activity and connectivity of cortical input and output in human M1” Neuron (2017) 96(6):1253-1263.e7 paper

Ramot M, Kimmich S, Gonzalez-Castillo J, Roopchansingh V, Popal H, White E, Gotts S, Martin A. “Direct modulation of aberrant brain network connectivity through real-time neurofeedback” eLife (2017) 6:e28974 paper

Gonzalez-Castillo J, Gang C, Nichols T, Cox B, Bandettini PA. “Variance Decomposition for multi-session fMRI”. NeuroImage, Special Issue on “Cleaning up the fMRI timeseries” NeuroImage (2017) 154:206-218 paper

Degryse J, Seurinck R, Durnez J, Gonzalez-Castillo J, Bandettini PA, Moerkerke B. “Introducing alternative-based thresholding for defining functional regions of interest in fMRI” Front. Neurosci. (2017):11:222 paper

2016

Craddock RC, Bellec P, Margules DS, Nichols BN, Pfannmöller JP, Badhwar AP, Kennedy D, Poline JB, Toro R, Cipollini B, Rokem A et al. “2015 Brainhack Proceedings” GigaScience (2016) 5(1):1–26 paper

Gonzalez-Castillo J, Caballero Guades C, Panwar P, Buchanan LC, Handwerker DA, Jangraw DC, Zachariou V, Bandettini PA. “Evaluation of Multi-Echo ICA denoising for task based fMRI studies: block designs, rapid event-related designs, and cardiac-gated fMRI”. NeuroImage (2016) 141:452-468 paper

2015

Gonzalez-Castillo J, Hoy CW, Handwerker D, Robinson ME, Buchanan LC, Saad ZS, Bandettini PA. “Tracking ongoing cognition in individuals using brief, whole-brain functional connectivity patterns”. PNAS (2015) 112(28):8762-8767 paper data

Gonzalez-Castillo J, Bandettini PA. “What cascade spreading models can tell us about the brain”. Neuron (2015) 86(6):1327-1329 paper

Gonzalez-Castillo J, Hoy CW, Handwerker DA, et al. “Task Dependence, Tissue Specificity, and Spatial Distribution of Widespread Activations in Large Single-Subject Functional MRI Datasets at 7T”. Cereb Cortex. (2015) 25(12):4667-4677 paper talk data

2014 and Earlier

Yang Z, Huang Z, Gonzalez-Castillo J, Dai R, Northoff G, Bandettini PA. “Using fMRI to decode true thoughts independent of intention to conceal”. NeuroImage (2014) 99:80–92. paper

Gonzalez-Castillo J, Handwerker DA, Robinson ME, et al. “The spatial structure of resting state connectivity stability on the scale of minutes”. Front Neurosci. (2014) 8:138 paper

Talavage TM, Gonzalez-Castillo J, Scott SK. “Auditory neuroimaging with fMRI and PET”. Hear Res. (2014) 307:4–15 paper

Smalt CJ, Gonzalez-Castillo J, Talavage TM, Pisoni DB, Svirsky MA. “Neural correlates of adaptation in normal hearing subjects to free learning with cochlear implant acoustic simulations”. NeuroImage (2013) 82:500-509 paper

Hutchison RM, Womelsdorf T, Allen EA, Bandettini PA, Calhoun VD, Corbetta M, Della Penna, S, Dyun, JH, Glover GH, Gonzalez-Castillo J, et al. “Dynamic functional connectivity: Promise, issues, and interpretations”. NeuroImage (2013) 80:360–378 paper

Bandettini PA, Kundu P, Gonzalez-Castillo J, Misaki M, Guillod P. “Characterizing and utilizing fMRI fluctuations, patterns, and dynamics” In: Weaver JB, Molthen RC, eds. SPIE Medical Imaging. International Society for Optics and Photonics; (2013) 86720T paper

Gonzalez-Castillo J, Duthie KN, Saad ZS, Chu C, Bandettini PA, Luh W-M. “Effects of image contrast on functional MRI image registration”. NeuroImage (2012) 67:163–174 paper

Handwerker DA, Roopchansingh V, Gonzalez-Castillo J, Bandettini PA. “Periodic changes in fMRI connectivity”. NeuroImage (2012) 63(3):1712–9 paper

Handwerker DA, Gonzalez-Castillo J, D’Esposito M, Bandettini PA. “The continuing challenge of understanding and modeling hemodynamic variation in fMRI”. NeuroImage (2012) 62(2):1017–1023 paper

Gonzalez-Castillo J, Saad ZS, Handwerker DA, Inati SJ, Brenowitz N, Bandettini PA. “Whole-brain, time-locked activation with simple tasks revealed using massive averaging and model-free analysis”. PNAS (2012) 109(14):5487–92 paper data

Gonzalez-Castillo J, Olulade OA, Talavage TM. “Using functional MRI to study auditory comprehension”. Imaging Med. (2012) 4(1):137–143 paper

Olulade O, Hu S, Gonzalez-Castillo J, et al. “Assessment of temporal state-dependent interactions between auditory fMRI responses to desired and undesired acoustic sources”. Hear Res. (2011) 277(1-2):67–77 paper

Soltysik DA, Thomasson D, Rajan S, Gonzalez-Castillo J, DiCamillo P, Biassou N. “Head-repositioning does not reduce the reproducibility of fMRI activation in a block-design motor task”. NeuroImage (2011) 56(3):1329–37 paper

Gonzalez-Castillo J, Roopchansingh V, Bandettini PA, Bodurka J. “Physiological noise effects on the flip angle selection in BOLD fMRI”. NeuroImage (2011) 54(4):2764–2778 paper

Gonzalez-Castillo J, Talavage TM. “Reproducibility of fMRI activations associated with auditory sentence comprehension”. NeuroImage (2011) 54(3):2138–2155 paper

Hu S, Olulade O, Gonzalez-Castillo J, et al. “Modeling hemodynamic responses in auditory cortex at 1.5T using variable duration imaging acoustic noise”. NeuroImage. (2010) 49(4):3027–3038 paper

Kemmerer D, Gonzalez-Castillo J. “The Two-Level Theory of verb meaning: An approach to integrating the semantics of action with the mirror neuron system”. Brain Lang. (2010) 112(1):54–76 paper

Kemmerer D, Gonzalez-Castillo J, Talavage T, Patterson S, Wiley C. “Neuroanatomical distribution of five semantic components of verbs: Evidence from fMRI”. Brain Lang. (2008) 107(1):16–43 paper

Gonzalez-Castillo J, Trastour D, Bartolini C. “Description Logics for Matchmaking of Services”. In: KI-2001 Workshop on Applications of Description Logics, Vienna, Austria. (2001) paper

Trastour D, Bartolini C, Gonzalez-Castillo J “Semantic Web Approach to Service Description for Matchmaking of Services”. In: Semantic Web Workshop, Stanford USA. (2001) paper